Papers for talk 1
- Bakker, et al., The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts, 2020
- Anderson et al., Desynchronizing Embryonic Cell Division Waves Reveals the Robustness of Xenopus laevis Development, 2017
- Antebi et al., Combinatorial Signal Perception in the BMP Pathway, 2017
- Averbukh et al., A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages, 2018
- Battich et al., Control of Transcript Variability in Single Mammalian Cells, 2015
- Cheng and Ferrell, Spontaneous emergence of cell-like organization in Xenopus egg extracts, 2019
- Corson et al., Self-organized Notch dynamics generate stereotyped sensory organ patterens in Drosophila, 2017
- Dias et al., Somites Without a Clock, 2014
- Frick et al., Sensing relative signal in the Tgf-β/Smad pathway, 2017
- Fried et al., A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development, 2016
- Gracía-Morales, et al., Dynamic Hh signalling can generate temporal information during tissue patterning
- Hiscock, Megason, Orientation of Turing-like Patterns by Morphogen Gradients and Tissue Anisotropies, 2015
- Hernández et al., Kinetic Responses of β-Catenin Specify the Sites of Wnt Control, 2012
- Ishimatsu, et al., Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation, 2018
- Johnson and Toettcher, Signaling Dynamics Control Cell Fate in the Early Drosophila Embryo, 2019
- Johnson, et al., Optogenetic Rescue of a Patterning Mutant, 2020
- Kicheva et al., Kinetics of Morphogen Gradient Formation, 2007
- Kicheva et al., Coordination of progenitor specification and growth in mouse and chick spinal cord, 2014
- Koromila and Stathopoulos, Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time, 2019
- Li, et al., Morphogen gradient reconstitution reveals Hedgehog pathway design principles
- Liao, et al., Faster embryonic segmentation through elevated Delta-Notch signalling, 2016
- Lim, et al., Review Design Principles of Regulatory Networks Searching for the Molecular Algorithms of the Cell, 2012
- Mani et al., Collective polarization model for gradient sensing via Dachsous-Fat intercellular signaling, 2013
- Materna, Davidson, A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos, 2012
- Mateus, et al., BMP Signaling Gradient Scaling in the Zebrafish Pectoral Fin, 2020
- Minor et al., FGF signaling regulates Wnt ligand expression to control vulval cell lineage polarity in C. elegans, 2013
- Morsut et al., Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors, 2016
- Nakamasu et al., Interactions between zebrafish pigment cells responsible for the generation of Turing patterns, 2009
- Nieuwberg et al., Localised dynactin protects growing microtubules to deliver oskar mRNA to the posterior cortex of the Drosophila oocyte, 2017
- Olsman and Goentoro, Allosteric proteins as logarithmic sensors, 2017
- Parker and Struhl, Control of Drosophila wing size by morphogen range and hormonal gating, 2020
- Perez-Carrasco et al., Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches, 2016
- Petkova et al., Optimal Decoding of Cellular Identities in a Genetic Network, 2019
- Qiao et al., Bistability and oscillations in the Huang-Ferrell model of MAPK signaling, 2007
- Selimkhanov et al., Accurate information transmission through dynamic biochemical signaling networks, 2014
- Sheth et al., Hox Genes Regulate Digit Patterning by Controlling the Wavelength of a Turing-Type Mechanism, 2012
- Simakov et al., EGFR-dependent network interactions that pattern Drosophila eggshell appendages, 2012
- Slavkov, et al., Morphogenesis in robot swarms, 2018
- Sprinzak et al., Cis-interactions between Notch and Delta generate mutually exclusive signalling states, 2010
- Song, et al., Energy budget of Drosophila embryogenesis
- Stueckemann et al., Antagonistic Self-Organizing Patterning Systems Control Maintenance and Regeneration of the Anteroposterior Axis in Planarians, 2017
- Toda et al., Programming self-organizing multicellular structures with synthetic cell-cell signaling, 2018
- Toda, et al., Engineering synthetic morphogen systems that can program multicellular patterning, 2020
- Voliotis et al., Information transfer by leaky, heterogeneous, protein kinase signaling systems, 2014
- Wartlick et al., Dynamics of Dpp Signaling and Proliferation Control, 2011
- Weber et al., Interstitial Dendritic Cell Guidance by Haptotactic Chemokine Gradients, 2013
- Zagorski et al., Decoding of position in the developing neural tube from antiparallel morphogen gradients, 2017
- Zhang et al., Mouse embryo geometry drives formation of robust signaling gradients through receptor localization, 2019
- Zhou et al., Free Extracellular Diffusion Creates the Dpp Morphogen Gradient of the Drosophila Wing Disc, 2012
- Zinzen et al., Combinatorial binding predicts spatio-temporal cis-regulatory activity, 2009
Papers for talk 2
- Aigouy et al., Cell Flow Reorients the Axis of Planar Polarity in the Wing Epithelium of Drosophila, 2010
- Banavar, et al., Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation, 2020
- Banavar, et al., Coordinating cell polarization and morphogenesis through mechanical feedback, 2021
- Behrndt, et al., Forces Driving Epithelial Spreading in Zebrafish Gastrulation, 2012
- Bidhendi, et al., Mechanical Stress Initiates and Sustains the Morphogenesis of Wavy Leaf Epidermal Cells, 2019
- Chan et al., Hydraulic control of mammalian embryo size and cell fate, 2019
- Chiou, Hufnagel, Shraiman, Mechanical Stress Inference for Two Dimensional Cell Arrays, 2012
- Crest, et al., Organ sculpting by patterned extracellular matrix stiffness, 2017
- DAngelo et al., In Vivo Force Application Reveals a Fast Tissue Softening and External Friction Increase during Early Embryogenesis, 2019
- Dumortier, et al., Hydraulic fracturing and active coarsening position the lumen of the mouse blastocyst, 2019
- Doubrovinski, et al., Measurement of cortical elasticity in Drosophila melanogaster embryos using ferrofluids, 2017
- Durand-Smet, et al., Cytoskeletal organization in isolated plant cells under geometry control, 2020
- Dutta, et al., Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo, 2020
- Etournay, et al., Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing, 2015
- Ferreira, et al., Chiral Cilia Orientation in the Left-Right Organizer, 2018
- Fried, et al., A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development, 2016
- Ganguly, et al., Cytoplasmic streaming in Drosophila oocytes varies with kinesin activity and correlates with the microtubule cytoskeleton architecture, 2012
- Gelbart et al., Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis, 2012
- Gillard, et al., Force Transmission between Three Tissues Controls Bipolar Planar Polarity Establishment and Morphogenesis, 2019
- Godard, et al., Apical Relaxation during Mitotic Rounding Promotes Tension-Oriented Cell Division, 2020
- Haigo and Bilder, Global Tissue Revolutions in a Morphogenetic Movement Controlling Elongation, 2011
- Hannezo, et al., A Unifying Theory of Branching Morphogenesis, 2017
- Hass, et al., The noisy basis of morphogenesis: Mechanisms and mechanics of cell sheet folding inferred from developmental variability, 2018
- Hubatsch, et al., A cell size threshold limits cell polarity and asymmetric division potential, 2019
- Hufnagel, et al., On the mechanism of wing size determination in fly development, 2007
- Khadka, et al., Feedback from Tissue Mechanics Self-Organizes Efficient Outgrowth of Plant Organ, 2019
- Koride et al., Mechanochemical regulation of oscillatory follicle cell dynamics in the developing Drosophila egg chamber, 2014
- Latorre, et al., Active superelasticity in three-dimensional epithelia of controlled shape, 2018
- Li, et al., On the mechanism of long-range orientational order of fibroblasts, 2017
- Kale, et al., Distinct contributions of tensile and shear stress on E-cadherin levels during morphogenesis, 2018
- Kirkland, et al., Tissue Mechanics Regulate Mitotic Nuclear Dynamics during Epithelial Development, 2020
- Maître, et al., Adhesion functions in cell sorting by mechanically coupling the cortices of adhering cells, 2012
- Mongera, et al., A fluid-to-solid jamming transition underlies vertebrate body axis elongation, 2018
- Mosaliganti, et al., Size control of the inner ear via hydraulic feedback, 2019
- Münster, et al., Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects, 2019
- Naganathan, et al., Active torque generation by the actomyosin cell cortex drives left–right symmetry breaking, 2014
- Naganathan, et el., Morphogenetic degeneracies in the actomyosin cortex, 2018
- Nerurkar, et al., Molecular control of macroscopic forces drives formation of the vertebrate hindgut, 2019
- Pawlizak, et al., Testing the differential adhesion hypothesis across the epithelial−mesenchymal transition, 2015
- Petridou, et al., Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling, 2019
- Pinheiro, et al., Transmission of cytokinesis forces via E-cadherin dilution and actomyosin flows, 2017
- Rauzi, Lenne, and Lecuit, Planar polarized actomyosin contractile flows control epithelial junction remodelling, 2010
- Saadaoui et al., A tensile ring drives tissue flows to shape the gastrulating amniote embryo, 2020
- Salbreux, Prost, and Joanny, Hydrodynamics of Cellular Cortical Flows and the Formation of Contractile Rings, 2009
- Sampathkumar, et al., Primary wall cellulose synthase regulates shoot apical meristem mechanics and growth, 2019
- Savin, et al., On the growth and form of the gut, 2016
- Saw et al., Topological defects in epithelia govern cell death and extrusion, 2017
- Scholich, et al., Quantification of nematic cell polarity in three-dimensional tissues, 2020
- Serra-Picamal, Mechanical waves during tissue expansion, 2012
- Serwane, et al., In vivo quantification of spatially varying mechanical properties in developing tissues, 2017
- Serra, et al., Dynamic morphoskeletons in development, 2020
- Shyer, et al., Bending Gradients: How the intestinal stem cell gets its home, 2015
- Shyer, et al., Emergent cellular self-organization and mechanosensation initial follicle pattern in the avian skin, 2017
- Skinner, et al., Topological Metric Detects Hidden Order in Disordered Media, 2021
- Stein, et al., Swirling Instability of the Microtubule Cytoskeleton, 2021
- Streichan, et al., Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors, 2018
- Striebel, et al/, A Mechanistic View of Collective Filament Motion in Active Nematic Networks, 2020
- Tallinen, et al., On the growth and form of cortical convolutions
- Tsai, et al., An adhesion code ensures robust pattern formation during tissue morphogenesis, 2020
- Wang, et al., Differential positioning of adherens junctions is associated with initiation of epithelial folding, 2012
- Williamson and Salbreux, Stability and roughness of interfaces in mechanically-regulated tissues, 2018
- Xu, et al., Water Affects Morphogenesis of Growing Aquatic Plant Leaves, 2020
- Zerzour, Kroeger, and Geitmann, Polar growth in pollen tubes is associated with spatially confined dynamic changes in cell mechanical properties, 2009